BtaEX6081140 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015991 | E-CADHERIN
Description
Bos taurus cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002763]
Coordinates
chr18:36231529-36236899:+
Coord C1 exon
chr18:36231529-36231711
Coord A exon
chr18:36233330-36233574
Coord C2 exon
chr18:36236754-36236899
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTTCTGTTCTTTAGGGC
3' ss Score
10.08
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TACGTGGGGTCAGTGCCTGAGAACGAGGCTAATGTGGCCATCACCACACTCACAGTGACTGATGCCGACGACCCCAACACCCCGGCATGGGAGGCTGTTTACACAGTATTAAATGATAACGAGAAGCAATTTATCGTCGTCACAGACCCAGTCACCAATGAAGGCACTCTGAAAACAGCTAAG
Seq A exon
GGCTTGGATTTTGAGGCCAAGCAGCAGTACATCCTGTACGTGGCAGTGACAAATGTGGCCCCCTTTGAAGTCACTCTCCCCACTTCCACAGCCACCGTCACTGTGGATGTGATAGATGTGAATGAAGCCCCCATCTTTGTGCCTCCTCAAAAGAGAGTGGAAGTGCCCGAGGACTTTGGCGTGGGCCTGGAGATCACATCCTATACTGCCCGGGAGCCAGACACATTTATGGAACAGAAGATCAC
Seq C2 exon
GTATCGGATTTGGAGGGACACTGCCAACTGGCTGGAGATTAATCCAGAAACGGGTGCCATTTCCACTCGGGCTGAGTTGGACAGAGAGGATGTCGATCATGTGAAGAACAGCACGTACACGGCCCTCATTATAGCCACTGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015991-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.012 C2=0.420
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(60.6=98.4)
A:
PF0002812=Cadherin=PD(37.4=45.1),PF0002812=Cadherin=PU(32.6=37.8)
C2:
PF0002812=Cadherin=FE(51.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCTGAGAACGAGGCTAA
R:
CCGTGTACGTGCTGTTCTTCA
Band lengths:
294-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]