DreEX6007821 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57662064-57665708:-
Coord C1 exon
chr7:57665610-57665708
Coord A exon
chr7:57664885-57665082
Coord C2 exon
chr7:57662064-57662162
Length
198 bp
Sequences
Splice sites
3' ss Seq
GAACTCTCCTCCCTCATCAGGAG
3' ss Score
7.25
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGTGGAGAGACTGCTTTGCATATGGCGGCCCGTGCTGGACAAATGGAGGTTGTGCGGTGTCTTCTAAGGAATGGAGCCATGGTGGATGCAAGAGCAAGG
Seq A exon
GAGGATCAGACTCCTCTTCACATTGCATCTCGTCTGGGTAAGACAGAGATTGTCCAGCTTCTGCTTCAACACATGGCTCATCCAGACGCAGCAACCGCTAATGGTTACACCCCGCTTCACATTGCTGCACGTGAGGGACATTTGGACGTTACTACTGTGCTATTAGAAGCTGGAGCTGCTCACTCCTTAGCTACCAAG
Seq C2 exon
AAAGGGTTCACACCTTTACATGTGGCCTCAAAGTATGGAAGCCTGGAAGTGGCAAAGCTTCTTTTGCAGCGACGGGCACCTCCTGACTCTGCTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313-'23-21,'23-19,25-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.221
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.7=93.9),PF127962=Ank_2=PU(8.3=18.2)
A:
PF127962=Ank_2=PD(82.1=97.0)
C2:
PF127962=Ank_2=PU(28.7=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGAGACTGCTTTGCAT
R:
CTTCCCAGCAGAGTCAGGAGG
Band lengths:
198-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]