HsaEX1003652 @ hg38
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2 [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr4:113271509-113277935:+
Coord C1 exon
chr4:113271509-113271609
Coord A exon
chr4:113274452-113274649
Coord C2 exon
chr4:113277837-113277935
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTACTTGGCTTGAGTTGTAGGAG
3' ss Score
0.82
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAAACTTCCTCTCTAAACCTAATAACATTGCTCGAGAATTCACCCTCTCCCGAAGAAGAGATAGTAAAAAATTGTGCCAAGCTACTACATTGAGCTCCAAG
Seq A exon
GAGGAACAGACACCTTTACATATTGCCTCCCGCCTGGGTAAGACAGAAATTGTCCAGCTGCTTCTACAACATATGGCTCATCCAGATGCGGCCACTACAAATGGGTACACACCACTGCACATCTCTGCCCGGGAGGGCCAGGTGGATGTGGCATCAGTCCTATTGGAAGCAGGAGCAGCCCACTCCTTAGCTACCAAG
Seq C2 exon
AAGGGTTTTACTCCCCTGCATGTAGCAGCCAAGTATGGAAGCCTGGATGTGGCAAAACTTCTCTTGCAACGCCGTGCTGCCGCAGATTCTGCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362-'41-47,'41-46,42-47
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=50.0),PF127962=Ank_2=PU(8.1=9.1)
C2:
PF127962=Ank_2=FE(43.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCTAAACCTAATAACATTGCT
R:
ACGGCGTTGCAAGAGAAGTTT
Band lengths:
170-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains