DreEX6009017 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3641238-3645040:-
Coord C1 exon
chr5:3644950-3645040
Coord A exon
chr5:3643018-3643183
Coord C2 exon
chr5:3641238-3641311
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCATGTTGTTTGTAGGTT
3' ss Score
9.64
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATTCTTGCAGGTCTTCTGCAGTTGGGGAATGTGGACTTCAGTCCCGCACCAGAAGAGGCTCAGCCATGTGATCTCAGTGGACAATCCAAAG
Seq A exon
GTTTTCTGCAGAAAGCGGCGGATCTGCTGCAGGTTTCTTTAGATGAGCTGCAGTCGTGTCTGATAGTGAGAACTCTGCGTGCTGGCAAACAAAACATCCTCAAACCTTGCTCTCAGTCCGAGTGTGGCATCCGCAGAGACTGTCTTGCTAAAGTCATTTATGCACA
Seq C2 exon
GCTATTTGACTGGTTAGTCACTTTCATCAACAACAGCATGTCTGCAGACAGTTCCATGTGGTGCAACTTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'2-3,'2-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.2=100)
A:
PF0006316=Myosin_head=FE(11.3=100)
C2:
PF0006316=Myosin_head=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTTCTGCAGTTGGGGAA
R:
CAATAAAGTTGCACCACATGGA
Band lengths:
157-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]