MmuEX6088401 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84710623-84712952:+
Coord C1 exon
chr11:84710623-84710713
Coord A exon
chr11:84711051-84711222
Coord C2 exon
chr11:84712879-84712952
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGCCCTCCTTTCTCCCCCAGTCT
3' ss Score
9.44
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTCCTAGCTGGACTGCTGCACCTTGGCAATGTCCATTTTGTTGACTCAGAGGATGAAGCCCTGCCCTGCCAAGTGATGGATGATACCAAGG
Seq A exon
TCTCTGTGAGGACCTCAGCCTTGCTGCTGCAGCTCCCAGAGAAAATGCTGCTGGAGAGTATGCAGATTCGAACCATCAAGGCAGGCAAGCAGCAGCAGGTGTTCCAGAAGCCCTGCTCCCGAGCCGAGTGTGACACACGCAGAGACTGTCTGGCCAAACTGATCTATGCACG
Seq C2 exon
GCTGTTCGACTGGCTGGTGTCTGTGATCAACAGCAGCATCTGTGCAGACTCCAAATCATGGACTGCCTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'18-18,'18-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
PF0006316=Myosin_head=FE(8.8=100)
C2:
PF0006316=Myosin_head=FE(3.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCTGGACTGCTGCACCTT
R:
CTATGAAGGCAGTCCATGATTTG
Band lengths:
162-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: