DreEX6011163 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27983190-27989874:-
Coord C1 exon
chr5:27989785-27989874
Coord A exon
chr5:27987190-27987453
Coord C2 exon
chr5:27983190-27983465
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCAATTCCCTTGCCTCTTAGATC
3' ss Score
8.15
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCCTCAGGCCTGGGACTGAATATGGAATGGGAGTGACTTCAATCAAGGAAGAGCGTGAGAGTTTGCCTGCTACGACCAACGCTGTGACTG
Seq A exon
ATCTTGATCCTCCCAAAGACCTTCAAGTAAGTGAGACCACAGAGACCACCCTGGCACTGGTTTGGAGAAGGCCGGTTGCTAAAATCGACACCTATAGTCTAGTGTTTATACCTGCGGATGGAGATAAAACGGAACTGAAGATACCTGGTGCTGCAAATACCTACATCCTGACTGGCCTGAACCCTGGCATGCTGCACACCATTACCCTGACCGCTGAGAGAGGAAGAAAGATGAGTGCGCCAGCCACTCTATCAGCATCCACAG
Seq C2 exon
ATGAGGAGAAGCCTCAGGTGGGCAACATCACCATCTCTGATGTGTCTTGGGACAGCTTCAGTATGTCCTGGGATCTGGACAGAGGAGAGGTTGAGGGATTTCTGATTGAAGTGTCTGACCCAGATGGCTTATCTGATGGCCAGAACCACACACTGTCTGGCCAGGAGTTCAGCCTGGCTGTCACTGACCTCTCTCCTAGTACTTTCTACAGGGTCACACTGTACGGGCTGTACAAGGGAGAGCTCTTAGACCCTGTCTTTGCCGAAGCCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'10-16,'10-15,12-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.270 C2=0.151
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(26.5=71.0)
A:
PF0004116=fn3=WD(100=88.8)
C2:
PF0004116=fn3=WD(100=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGCCTGCTACGACCAA
R:
CTGTGATGGCTTCGGCAAAGA
Band lengths:
308-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]