GgaEX6014928 @ galGal3
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
NA
Coordinates
chr17:3059101-3069581:-
Coord C1 exon
chr17:3069492-3069581
Coord A exon
chr17:3068859-3069122
Coord C2 exon
chr17:3059101-3059373
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTTTTCACCTGTAGATC
3' ss Score
11.52
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTTGAGACCTGGAACTGAATATGGCATTGGAGTGACAGCAGTGAGACAGGACAGGGAAAGTGCTCCTGCTACCATTAATGCTGGCACTG
Seq A exon
ATCTTGATAACCCCAAGGACTTGGAAGTCAGTGACCCCACTGAAACCACCCTGTCCCTTCGCTGGAGAAGACCAGTGGCCAAATTTGATCGTTACCGCCTCACTTACGTTAGCCCCTCTGGAAAGAAGAACGAAGTGGAGATCCCTGTGGACAGTACCTCTTTTATCCTGAGAGGATTAGACGCAGGGACGGAGTACACCATCAGTCTAGTGGCAGAGAAGGGCAGACACAAAAGCAAACCCACAACCATCAAGGGTTCGACTG
Seq C2 exon
AGGAAGAACCTGAGCTTGGAAACTTATCAGTGTCAGAGACTGGCTGGGATGGTTTCCAGCTCACCTGGACAGCAGCCGACGGGGCCTATGAGAACTTTGTCATTCAGGTGCAGCAGTCTGACAATCCAGAAGAAACCTGGAACATTACAGTCCCCGGCGTACAGCACTCTGTGAACGTTACAGGCCTCAAGGCCAACACACCTTATAACGTCACACTTTATGGTGTGATTCGAGGCTACAGAACCAAACCCCTTTATGTTGAAACCACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'10-12,'10-11,11-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.407 C2=0.250
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.4=74.2)
A:
PF0004116=fn3=WD(100=89.9)
C2:
PF0004116=fn3=WD(100=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGCAGTGAGACAGGACA
R:
GGGTTTGGTTCTGTAGCCTCG
Band lengths:
308-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]