DreEX6011221 @ danRer10
Exon Skipping
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28560483-28562715:+
Coord C1 exon
chr5:28560483-28560648
Coord A exon
chr5:28560732-28560871
Coord C2 exon
chr5:28562552-28562715
Length
140 bp
Sequences
Splice sites
3' ss Seq
GAGTGCACTGTATGTTTCAGATA
3' ss Score
6.84
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TGTATGCGTTTCACTGTTTTTAAAAAGGAAAACTACAGCAATGAGATCACATCTCACAGAGACCTTTCACTGGATTTCAAGGAAAAGTATTTCAAACAGATTTTAGACCACTTCAATTACAACAGTCTTGGCAATGGCACATATGATCAACGCTACCTTATTACAG
Seq A exon
ATAAGTACTGGAAGAAAGGCTATGGACCCATTTTCTTCTACACGGGCAATGAGGGGGACATAAGTGAGTTTGCACGTAATTCGGGCTTCATGGTAGAGCTGGCAGCAGCGCAGGGAGCCCTGCTCATATTTGCTGAACAT
Seq C2 exon
AGGTACTATGGGAAATCTCTTCCATTTGGGAAGAATTCTTTTAAAATCCCTGAGGTGGGGTTGTTGACGGTGGAGCAGGCCCTCGCAGACTATGCTGTCATGATCACAGAGCTGAAGGAGGAGCTGGGAGGTCAAACATGTCCCGTCATTGTCTTTGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750-'4-5,'4-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(5.4=41.1)
A:
PF055777=Peptidase_S28=FE(10.7=100)
C2:
PF055777=Peptidase_S28=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACAGAGACCTTTCACTGGA
R:
CATGTTTGACCTCCCAGCTCC
Band lengths:
255-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]