RnoEX0029672 @ rn6
Exon Skipping
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2571915-2573170:-
Coord C1 exon
chr3:2573057-2573170
Coord A exon
chr3:2572843-2572982
Coord C2 exon
chr3:2571915-2572050
Length
140 bp
Sequences
Splice sites
3' ss Seq
GACCCATTTACTTCCCACAGATA
3' ss Score
9.27
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CCGACAGCGTTCTAGACCCTGACTTTCGTGAGAATTACTTTGAGCAGTACATGGACCATTTCAACTTTGAGAGTTTCAGCAACAAGACCTTTGGCCAGCGGTTCCTGGTGTCAG
Seq A exon
ATAAGTTCTGGAAGATGGGCGAGGGGCCCATTTTCTTCTACACAGGGAATGAGGGGGATATCTGGTCCCTCGCTAACAACTCTGGCTTCATAGTGGAACTGGCAGCCCAGCAGGAGGCCCTGCTGGTCTTTGCTGAGCAT
Seq C2 exon
TTATGGGGGAATGCTGAGCGCCTACATGAGGATGAAGTACCCCCACCTGGTGGCTGGGGCACTGGCGGCCAGCGCTCCTGTTATAGCTGTCGCAGGCCTTGGCAACCCCGACCAATTCTTCCGAGATGTCACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(5.4=59.0)
A:
PF055777=Peptidase_S28=FE(10.7=100)
C2:
PF055777=Peptidase_S28=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGTTCTAGACCCTGACT
R:
CGCTGTGACATCTCGGAAGAA
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]