GgaEX1020918 @ galGal3
Exon Skipping
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:689163-691834:+
Coord C1 exon
chr17:689163-689276
Coord A exon
chr17:691166-691305
Coord C2 exon
chr17:691671-691834
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTGTCAATTGTCTCATACAGCAA
3' ss Score
7.61
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
CCGCCCAGCCGGCCGGGCCGGGCCTGGAGGAGCAGCTCTTCCCGCAGGTGCGGGACCACTTCCGCTTCGAGGCCGGCGGCAACGAGACCTTCCCGCAGCGGTACCTGCTCTCAG
Seq A exon
CAAAGTTCTGGAAGAAAGGATTTGGACCGATCTTTTTCTATACTGGTAATGAAGGCAACATCTGGACTTTTGCTGAGAACTCGGACTTCATATTTGAGTTAGCAGAGCAGCAGCAAGCTCTTGTGATTTTTGCTGAGCAT
Seq C2 exon
AGATACTATGGGAAATCTCTTCCGTTTGGACTTGAGTCAACGCAGCTAAAGAATACTCATCTGCTCACTGTGGAACAAGCCCTTGCTGACTATGCAGTGCTAATTACTGAGCTTAAGCAGCAGTATGGAGCTGCAGGCTGCCCTGTCATTGCTTTCGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=PU(5.4=59.0)
A:
PF055777=Peptidase_S28=FE(10.7=100)
C2:
PF055777=Peptidase_S28=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAGGAGCAGCTCTTC
R:
TGCCTCCGAAAGCAATGACAG
Band lengths:
256-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]