DreEX6011380 @ danRer10
Exon Skipping
Gene
ENSDARG00000035507 | ddx31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]
Coordinates
chr5:29117241-29118492:+
Coord C1 exon
chr5:29117241-29117282
Coord A exon
chr5:29117390-29117454
Coord C2 exon
chr5:29118373-29118492
Length
65 bp
Sequences
Splice sites
3' ss Seq
TATGCATGTATTTGTTTTAGCCT
3' ss Score
7.12
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CTTGCCTTGCAGAGCTTTCAGATGTTTCAGAAGCTTCTTAGA
Seq A exon
CCTTTCACCTGGATTGTTCCAGGAGTTTTAATGGGAGGAGAGAAAAAGAAAGCAGAAAAAGCCAG
Seq C2 exon
ACTGCGGAAGGGCATAAATGTTCTGATCTCGACTCCAGGCCGACTGGTGGACCACATCAAGAACACACTAAGTATTGCTTTCAGTGCTGTGCGCTGGCTCATTCTGGATGAAGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035507-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.3=100)
A:
PF0027024=DEAD=FE(11.8=100)
C2:
PF0027024=DEAD=FE(22.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTTGCAGAGCTTTCAG
R:
TCAGCTTCATCCAGAATGAGCC
Band lengths:
159-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]