RnoEX0026863 @ rn6
Exon Skipping
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7438741-7441890:+
Coord C1 exon
chr3:7438741-7438782
Coord A exon
chr3:7439642-7439706
Coord C2 exon
chr3:7441771-7441890
Length
65 bp
Sequences
Splice sites
3' ss Seq
GGCCTGGTATTTTTATATAGCCA
3' ss Score
4.09
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTGGCTCTGCAAAGCTTTGACACTGTTCAGAAGCTACTTAAG
Seq A exon
CCATTTACCTGGATTGTTCCTGGAGTGTTGATGGGCGGAGAGAAGAGGAAATCAGAAAAGGCCAG
Seq C2 exon
ACTCCGCAAAGGCATAAATATCCTTATCTCAACTCCTGGCCGGTTAGTGGATCATATAAAATCCACAAAGAACATTCACTTTAACCGAGTACGGTGGCTGGTTGTGGATGAAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.3=100)
A:
PF0027024=DEAD=FE(11.8=100)
C2:
PF0027024=DEAD=FE(22.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCTGCAAAGCTTTGACA
R:
TGTCTGCTTCATCCACAACCA
Band lengths:
160-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]