RnoEX0026862 @ rn6
Exon Skipping
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7437340-7439706:+
Coord C1 exon
chr3:7437340-7437384
Coord A exon
chr3:7438741-7438782
Coord C2 exon
chr3:7439642-7439706
Length
42 bp
Sequences
Splice sites
3' ss Seq
CAACTTTTTCATACTTACAGTTG
3' ss Score
7.32
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CGTAGTGATGGCCCCTATGCTTTGGTCCTAGTGCCCACCAGAGAG
Seq A exon
TTGGCTCTGCAAAGCTTTGACACTGTTCAGAAGCTACTTAAG
Seq C2 exon
CCATTTACCTGGATTGTTCCTGGAGTGTTGATGGGCGGAGAGAAGAGGAAATCAGAAAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.9=100)
A:
PF0027024=DEAD=FE(7.3=100)
C2:
PF0027024=DEAD=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAGTGATGGCCCCTATGCT
R:
CTGGCCTTTTCTGATTTCCTCT
Band lengths:
110-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]