DreEX6011381 @ danRer10
Exon Skipping
Gene
ENSDARG00000035507 | ddx31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-030131-3973]
Coordinates
chr5:29117096-29117454:+
Coord C1 exon
chr5:29117096-29117140
Coord A exon
chr5:29117241-29117282
Coord C2 exon
chr5:29117390-29117454
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTCTGATTTCTGTCCCTCAGCTT
3' ss Score
8
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
Exon sequences
Seq C1 exon
AGATCGGATGGGCCTTTAGCTGTTGTGATTGTTCCAACCAGAGAG
Seq A exon
CTTGCCTTGCAGAGCTTTCAGATGTTTCAGAAGCTTCTTAGA
Seq C2 exon
CCTTTCACCTGGATTGTTCCAGGAGTTTTAATGGGAGGAGAGAAAAAGAAAGCAGAAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035507-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.9=100)
A:
PF0027024=DEAD=FE(7.3=100)
C2:
PF0027024=DEAD=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGGATGGGCCTTTAGCT
R:
TGGCTTTTTCTGCTTTCTTTTTCTCT
Band lengths:
109-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]