GgaEX1019115 @ galGal3
Exon Skipping
Gene
ENSGALG00000003534 | F1NM06_CHICK
Description
NA
Coordinates
chr17:7268980-7271527:-
Coord C1 exon
chr17:7271483-7271527
Coord A exon
chr17:7270544-7270585
Coord C2 exon
chr17:7268980-7269044
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTTTGATTTCCTTAGCTT
3' ss Score
6.96
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CGAAGTGACGGGCCTTATGCACTGGTGTTAGTCCCAACAAGAGAG
Seq A exon
CTTGCACTCCAGACTTTTGATACAATACAGAAGCTACTCAAG
Seq C2 exon
CCATTTACCTGGATTGTTCCTGGAGTGCTTATGGGGGGAGAAAAGAGAAAATCAGAAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.9=100)
A:
PF0027024=DEAD=FE(7.3=100)
C2:
PF0027024=DEAD=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGACGGGCCTTATGCAC
R:
TGGCTTTTTCTGATTTTCTCTTTTCT
Band lengths:
108-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]