RnoINT0046008 @ rn6
Intron Retention
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7437340-7438782:+
Coord C1 exon
chr3:7437340-7437384
Coord A exon
chr3:7437385-7438740
Coord C2 exon
chr3:7438741-7438782
Length
1356 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CAACTTTTTCATACTTACAGTTG
3' ss Score
7.32
Exon sequences
Seq C1 exon
CGTAGTGATGGCCCCTATGCTTTGGTCCTAGTGCCCACCAGAGAG
Seq A exon
GTAAGTAAGCAGATACTTGTAGGTGAGGTTTGTGCGCACTGTAAGTGATGGTGGCCTGTTGACTTGAAGCACTTTCTTCACTTCCCTGCAGACGAATCTCTGCCCCTGCTTTTCTTCACATGCCTTCTCAGGACCTGTCCTGCGGGGTTTGTTAAGGAGGAATGGTTAAGTGCTCTTTAAAAATCACGGGCTGGGTACGAGAAGACATTTCTCCGTTGTCTAATAAAAGACTAACAATACTTAGATTGCTAATCCTTTAAAATAAATTAGAGGAATTGCATTTTTATGCTTCCAAGTATCTTAAAGAATGTGACTGAAAAATTTGGATCTAAAAATGAACCTTGTTGTTCATGGAAGTAAATAGAAATAGCTTCTGTCAGATCTGGGTGATGCATCCTCAAAGAACTTTCAGGAAAATGGAAATTTCCAGACAGCTTTGCTTTCTTTGTTTCTGACTTTGTTTTCTTTTAAGATTTATTTTTATTTAATGTGTTTGGGTGTTTTGCCTATGTGTATGTCTGTGAACCATATGTGTACAGTGTCCATGGATACCAGAAGAGGGTGTCAGTCTTGGAAGTGAAGTTAGAACCAACTGTGAGCTGATATGTGGGTGCTGGGAACCGAACCTGGGTTCTCTGCGAGAGCAGCCAGTGCTCTTGACTGCTAAGCTCTGTCCAGCCTCTCTGGTCTGCCTTTCATACAGTCTGCTCTCTACTCTGTGTCTGTTCTGTCCAGGGAGGAGCATGAGCGGGGAGGCACGTTGAAATGTTTTCGGCAGCAAACCTGTCACTTCTCTAGAATGTTAATCATTGTAGGGACAGCACACAACTATGGACACCATTCTGTAGGACTGTTTTGATAGTGTTTAGTAGTTACCACCTAGATTAATTTTACTATTCCTAAATCCATTGGGCTTCTCTTTGTAAACTCAGGACTGACCCTGTGCACCTGAGAATACAGCCAAGTTCCCCAGTACCTGTCAGGCTGCTGCTGTGCTCTCCCTCTAATGCACAATACGCTTCCTTTCTGTGGAGAGCCAAGACCAGTTGACATCTTTTCATTTTCTTCCAAGCCTACACTGAACTTCTCTGTGTGACACTGGGAGTCTGAGCCAGCAGAGGGAGCACAGAACACTGTTTTTCTATGTCTAAGAATGTATGTGATATCTTCACTCTCAGTTCCTAAACTGACAGATTTCAAACCAGTCTTAAGAAGAGATCTCTGTAGAGCATTTACTTGTCCTAAGCCTTGAGGTCCAGGGCTGTACCCTGATCGATTCAGACGGTCTTTTCTTTACAAATGTAAAAAGGAAGCAAGGGGCCCTGCTTACTGTCTCCAACTTTTTCATACTTACAG
Seq C2 exon
TTGGCTCTGCAAAGCTTTGACACTGTTCAGAAGCTACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040:ENSRNOT00000064323:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.9=100)
A:
NA
C2:
PF0027024=DEAD=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]