HsaINT0046162 @ hg19
Intron Retention
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135526462-135527879:-
Coord C1 exon
chr9:135527835-135527879
Coord A exon
chr9:135526504-135527834
Coord C2 exon
chr9:135526462-135526503
Length
1331 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
AACTTTTAAAATTTTTACAGCTA
3' ss Score
6.65
Exon sequences
Seq C1 exon
CGCAGTGATGGCCCCTATGCCCTGGTGCTCGTGCCAACGAGAGAG
Seq A exon
GTAAGCAGGCTCCCTTTTGGGACAAGTTTTAAGCACATGCTTTCACTAATGTCCCGTTGAATTTAAAAGTGGTTTTACCATGTTTCTCCCTACTGCACAAGCCACTGCACACCAGTTCCATTTGCCTGGAAACCATCCTTCTGGTTCTTGTCAAGGAGAAAAATTCAAGTAGTCTCTGAGAATCATAAGTATGGAAAAGTATTTTCCTATTGTCTAGAAACTAATGATACTATTAAATGTCTGTTTAATTGGGTTTTGAATTAAGTTGCTAAAAAAAAACCTACAGAAATGCAATTTTTTAGCAACTTTATTCAAAACCAAAAGCAGTTGGCTCTGAAAATGAACCTTTATTTTTTTTAAGAAGCTACTGCTACCAAAAATGTTACTTGTTCCTAAAAGTTAAACTTTTCAATATTTTTTTCTTTCTTGGTGGAAATCTCTTCTATCTGATCTATTTTATTTGCCTACAGAGGCAACTTCAGATTAGGGTATGTGGTTTCTATATCAAATGCTAATCACTTCCTTACAGAGAATTGATCACAGAGATGATTTGAAGTCAGCTTTTCATATAGCCTGCAGTCCCCTATCTCAGCTCAGTCCAATGAAGGAGCAGGCACAGAAGCTATTAAAATTTTTACAGCAGCAAACTTGCTACTTCTCGAGGATGCTTCATGAATACTAAATATGTGGAAACTGTATATACGTTCTTTAAGAACGGGATTCTGTATGAGGCATTTTTGAAGGTTGTTAATGGTTGTAGCCTACTTTAATTTTCACTTGCTTTGTTCTCAAATGGAGCTGTTGGTTTGCTTTTGTTTTATTGATATAAACTTGAGGAGCGACCATCTCCCAGGCTTCAGATATCCTGGCACAGTTGTAGAATACAGTCATCGCTCCTTGAGAGCGAAGTTCCCAGAGGCTACCCTGTTGCGTCACTATTGTGGTTTACTCTGCGTACATATTATATTCTTTCTCTTTCTAAGGAGAGTCAAATTCAGGTTACTTTGTTTCATTCTCTTACGTTTTTGTGCACCACAGACTTGAACTTCTCTGTGTGGCACTCTGGGAATTTGAGCCAGCAGAGGGAGCACAAAACACTATTTTTGTGTATGTCCAAGAAATAGAAGTGTTGTCTTTACCCTCTTTGCCCAAACTGACAGGTTGCAGAACCAGTCTAAGAACAAGGTATATTAGATTCTGTGTATAGGATTTTTTTTCTTCTTAAATCTTAACTTGAGGTCCAAGTTTGGATCCTAATCACATTAAATTGTCTTTAAAAAAAAAAAAAGGGGGATCCTGTTCATCATCTATAACTTTTAAAATTTTTACAG
Seq C2 exon
CTAGCTCTACAAAGCTTTGACACTGTCCAGAAACTGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-DDX31:NM_022779:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.9=100)
A:
NA
C2:
PF0027024=DEAD=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)