GgaINT0125435 @ galGal3
Intron Retention
Gene
ENSGALG00000003534 | F1NM06_CHICK
Description
NA
Coordinates
chr17:7270544-7271527:-
Coord C1 exon
chr17:7271483-7271527
Coord A exon
chr17:7270586-7271482
Coord C2 exon
chr17:7270544-7270585
Length
897 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTTGTGTTTGATTTCCTTAGCTT
3' ss Score
6.96
Exon sequences
Seq C1 exon
CGAAGTGACGGGCCTTATGCACTGGTGTTAGTCCCAACAAGAGAG
Seq A exon
GTAGGTGACCCTTTTCCTTTCAGTCTTGCTGAGTGTTTGCATGTAGGGCAGATGTGGATCCACAAGAGCCTAAAAACTCTTGGGAGACGTTTGTCCTTTTGCCCTCACAGAAAGAAAGTTTGCTCTCTGGATGTGTGTTGGCACTTTTGCTTGCTGCCATACTGAAATGAGTCATAAGAAATCTCTTATGTTTTTCCATGCAGTGAGATATTAATTGGCAAAACTGGAGAAACTGTCTAGTTCAGTGCGTGGGAAGGAGAAGCTTGCCTAACTCATGCAGGGGTTATAAGTAAAGCCATTGAAATTAGTTTTGCAAGTGCATAGCTTTATACATACACATCATTTTTAAAGTCTCTCTTTCAAATATATAAGTGAATGCTGAAGATGAGGCTATCAACAGTTGGTTTCTCCACTGAACTGTCTTCTGTTTGATTTATATGATTTGCAATTGCCAACGCAATTTCAGAGGAAGCTATCAACCTTTTTTTTTTTTTTTTTTGTGCTTGAAATAATTATAACTTCAGTGTGGAGAATTGATTACAGGTATCCAGTTTGGGTCACAGTATTTCATACAACCTGCAGTGCAATATCTCATCTCAGTTCCATGTAAAGAGAAGGATCTGAAGCTGTTTTAAATTTTTACTGCAGTAAGCTCTCTGCCTTGCTAGAATGCTCCACGAGTACTAAGCATATAGGAAACTCTTCATGAGCTTGTTTAAAGAGCTTCAATTAAGTGCACTTACGCAGATAACTTGTAATTGCAATTGGTGTCACTTTTACTTTCCATTGAAGGCAATGGCCTTTCTTGAGAGCTTACCAAATAATATGTAACATGTGTAGTCAGAGCATTTAAAAAAGTTTTCTCAGAACTCACTTTCTTGTGTTTGATTTCCTTAG
Seq C2 exon
CTTGCACTCCAGACTTTTGATACAATACAGAAGCTACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534:ENSGALT00000005588:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.9=100)
A:
NA
C2:
PF0027024=DEAD=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]