DreEX6011743 @ danRer10
Exon Skipping
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31880497-31882358:-
Coord C1 exon
chr5:31882241-31882358
Coord A exon
chr5:31880725-31880855
Coord C2 exon
chr5:31880497-31880540
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATTTTGCTTTTTAAATTCAGGTT
3' ss Score
8
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACTAAAGGGTGCGCTGTTGTTCATCACTATAGCCTTAATAGGAACTGGCTGGGCCTTTGTCAAGCATATTCTTTCAGATAAAGACAAGAAGGTTTTCATGATCGTCATTCCTCTACAG
Seq A exon
GTTCTGGCCAATGTGGCATACATTATTATCGAGTCCACAGAGGAGGGCTCCAGTGAGTATGGTTTGTGGATGGAGATCTTGTTTCTGGTGGATCTGCTCTGCTGCGGTGCTATTCTGTTTCCTGTGGTCTG
Seq C2 exon
GTCCATTAGACATTTACAAGAGGCATCAGCGACAGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(13.2=100),PF069126=DUF1275=FE(22.5=100)
A:
PF068148=Lung_7-TM_R=FE(14.5=100),PF069126=DUF1275=FE(24.9=100)
C2:
PF068148=Lung_7-TM_R=FE(5.1=100),PF069126=DUF1275=PD(3.5=37.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAAAGGGTGCGCTGTTGTT
R:
CTTTGCCATCTGTCGCTGATG
Band lengths:
162-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]