HsaEX0028230 @ hg38
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
Coordinates
chr9:130101106-130107539:+
Coord C1 exon
chr9:130101106-130101223
Coord A exon
chr9:130104420-130104550
Coord C2 exon
chr9:130107496-130107539
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCAACTTCTCATGTCTGTAGGTC
3' ss Score
7.86
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TTTGAAAGGGGCGCTACTCTTCATCACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGCACATCCTTTCTGATAAAGACAAAAAGATCTTCATGATTGTCATTCCACTCCAG
Seq A exon
GTCCTGGCAAATGTAGCCTACATCATCATAGAGTCCACCGAGGAGGGCACGACTGAATATGGCTTGTGGAAGGACTCTCTATTTCTGGTCGACCTGTTGTGTTGTGGTGCCATCCTCTTCCCAGTGGTGTG
Seq C2 exon
GTCAATCAGACATTTACAAGAAGCATCAGCAACAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358_MULTIEX3-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(13.4=100)
A:
PF068148=Lung_7-TM_R=FE(14.8=100)
C2:
PF068148=Lung_7-TM_R=FE(5.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAAGGGGCGCTACTCTT
R:
CTTTTCCATCTGTTGCTGATGCT
Band lengths:
162-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development