DreEX6011750 @ danRer10
Exon Skipping
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31891470-31892003:+
Coord C1 exon
chr5:31891470-31891547
Coord A exon
chr5:31891622-31891719
Coord C2 exon
chr5:31891905-31892003
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTAATATTTGCTGCTTATAGAAA
3' ss Score
4.63
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCTAACCTGATTTCCGAGTCTCTGGTGGTGTTTGTCTGTGCCACCACAGGACAGGGGGACCCTCCAGACAATATGAAG
Seq A exon
AAATTCTGGAGGTTTCTGTTCAGGAAGTCTTTGCCAGCTGATTCTCTTAGTCGTCTTGACTGTGCTGTGCTGGGTCTTGGAGACTCTTCGTATCCAAA
Seq C2 exon
GTTCAACTTTGTAGCTAAGAAGCTCCACAAGCGTTTGCTTCAGCTTGGTGCAAATATGCTGCTGCCTGTTGGACTGGCTGATGACCAGCATGACCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429-'7-5,'7-3,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(18.1=100)
A:
PF0025820=Flavodoxin_1=FE(23.2=100)
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCGAGTCTCTGGTGGTGT
R:
CCCAGGTCATGCTGGTCATCA
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]