RnoEX0058781 @ rn6
Exon Skipping
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2469688-2474446:-
Coord C1 exon
chr3:2474369-2474446
Coord A exon
chr3:2471267-2471364
Coord C2 exon
chr3:2469688-2469786
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACAGTTTCCTGTGGCTACAGAAC
3' ss Score
5.31
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACTACAGGCCAAGGAGACCCTCCTGACAACATGAAG
Seq A exon
AACTTCTGGAGGTTCATATTCCGGAAGAGCCTGCCATCCACCTCCCTCTGTCAAATGGATTTTGCTGTCCTAGGCCTCGGGGATTCCTCATATGCCAA
Seq C2 exon
GTTCAACTTTGTGGCCAAGAAGCTCCATCGCAGGCTGCTGCAGCTAGGAGGCAATGCCCTCGTGCCTCCGTGTCTGGGTGACGACCAGCATGAGTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616-'2-6,'2-5,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(18.1=100)
A:
PF0025820=Flavodoxin_1=FE(23.2=100)
C2:
PF0025820=Flavodoxin_1=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAATCTCATTAGGGAGCCC
R:
TAACTCATGCTGGTCGTCACC
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]