RnoINT0099542 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2471267-2474446:-
Coord C1 exon
chr3:2474369-2474446
Coord A exon
chr3:2471365-2474368
Coord C2 exon
chr3:2471267-2471364
Length
3004 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACAGTTTCCTGTGGCTACAGAAC
3' ss Score
5.31
Exon sequences
Seq C1 exon
GCGAATCTCATTAGGGAGCCCCTGGTGATATTTGTTTGTGCGACTACAGGCCAAGGAGACCCTCCTGACAACATGAAG
Seq A exon
GTAAGGCTGGCCTGATGTGTACCCTCGACCAGTTTTCTTTGCCGTGTAAGAGTCCCAGTGTGCACAGAAATACCTTCCCTTCAAAACATGTTGAGTATGAGAGGTGCCTTGGAGAGATATTCTTTGTGTAGATCCGAGGAGAGAAATAGCTCTTAGTAGCCATTCAATAGCCTTGACCATTTTGTTTCCCAGATTGACATGAGTCTGGTCTGAGTCATGTGAAGTTCAAGCTTTGTAACATTCAGAGAACTTTCTTTAATTCTCTCCTTTTTTCAAGCACATATATTCCTGGCACCATCTGAAACATAGCAGCCACATTTTTCCTTTATGGAGATCAGTGGCCAAAACAACAGATTTAATGGTCAATTACCAGGAAATACCTTGTGTTGGGGAAAATGCCAGATGTTCAGGAAGTGAAGGGGGTCCTGAAACCGGACACAACTTTTTGGAGGGAAGGAGCACACCTATAATTCTAGCTCCCGGGAGGCAGGAGCAGATGGAGCTAGCCAGGGCTACGGTAGGGAGACACTGTCTCTAAAATAAATTAGTAAAAGTAGGGGCATAAGGTGGTGAGAAGCAACCTGTGTGAAGGGCAGAAAGTTGAGGATTCCTCAGCCATGAGCTACAGTGAAACATGTGGGCTTAAGACGGAATCTATAGGAACTATGGAAGTGACACAGTGATGCTGTCAGTATAGCAAGACCACCACCTGTCTGAAGGTAACAAGAATAACACTAGGGAATGCATCACCATAAGCAGGAAGTGCCCCTGTGCTTTGAGGTGGGTGGTGGCCTAAGGCTGGATAAACCAGGCACATTCCAGAGAAGCCAAAAGGGTAGAGCCAACAGGATGTGTATCAGAGGGATCTAGAAGATGAAGGACAGAATCACAACACAAGAAACAGGATACATAGTAATTCCACCTGTGAAATGAGAGGACCACGTTGGGCCGGTGCCAGGAGATATCTAGAGGAACTGCAGTTAGCTGTGTAGTACTAGGAAGGTCCTAGGAAGTGTCACTGTTGAAGCACCCAAAATAAAACTGAAAAAAAGCCCCTATCCTTCAGGCTTGCCATCTAGCAAGGACAGTGTCAGACAGTTTCCCTTCACAAGGTCAATGACAGGGTGGAAGGCTTGAAAGGCGTCCCTAGGATCAGTAGTGACTGCTAAGGAGAGTAGTCGTCTATGAGAGGCAGACACTGTGATCTTCAGAACTAGAGAAGATGAAGTAGAATCAGGAGAGTTCAAGGTTGCCCTCACCTACATATTAAGAAACTGTATCAGCCAGGTATGGTAATATACATCTGTAATCTCAGCACTCCAGAGGCTAAACCTGAAGGACCAAGAGTTTGGGGCCAGCCTCAAACTAATGTCAACCAAAAACATGACTCAAACATAAACAACTTGTCCGGCAGTGATAGGAAACTTGGAGTCAGAGGCAGGTGGACCTCTGTGAGTTTGAGGCTGGCCTCGTTTACAGAGTGAGGTCCAGGACAGCCAGGGCTATAGAGTGAAAATCCTGTCTCAAAATAAAATAAAAATGAGAAAGGGACAAAGAGGTGAGGGAATGGTGACTTGCCTCAGGTTTGAGGCTTGCTGGTCTGTGGATAGCCCACATAGGAGCAGGAGTCAGTAGTTACTGTCTCAATCACAACAGGAGCTGAAGCCCTTTGAAGAGGCTACAGGCCCAGCATCCCAAAACACACTTGGGAGTATGGTCCCTCATCTCTGCAGGACAGGAAGGCCTTGGCCTTGTCATCTTTGTCCTAATCCTTTTTAGAAACACATTGGAATTATAGGGGAAAAATCTAGTAACTGGGTCTCCTCTTATCCATTTCTGGTGAAATTGACTGACAGGCATGTCCTAGAGCTTTCCATCAGCTTTTCCAGGAGCTTCTAAAGTACAAATAGGTCACAGAGAGAGAATGAATCAGTGAATGAATGAGTATGTCTACTGGAGTGAAGACTCTTGTGAAAGGGAGAGACAAACAGAACCCAGAATTCAGTATGGATGCAGCATTCCTGGGCTGAGACCAGGACCAAAGTAGGACAGACAGGTAGGGAAGCAGGAAAAAACCTGCAGAGTATTGGAAGATATAGCTGAGCAGTTCTCCCAAGTGTAACACAGAAATTGGACCATGGAGGAAAACTGTCACCAGAGCTTAAAGATGACATGAGAAGTGACAGAATGAGGTAGGACTAGGCAGGCAATTAATAAGGACAGTAACGGTGTCACACAGCTGGGTGGTGGTGGCACAGCCTTTAATCTCATCACTCCAGAGGCAGGTGGATCTGTTGAGTTCAAGGCCAGCATGGTCTACAGAGAGAGGGTCCCAGTGCAGCCAGGGCTACACAGAGAAACCCTGTCTACAAGCAAATAAACAATGCCACATAATGGAAGGGCAAAACTGCAACCTGAGACAGTGACCACATGCTTGCAAGGGGCACCCATCAAGGATGGCTAACAGGCCAGAGGGCAACAAGCTATAGTCAGCAAACTGGAAAGGTCAGTGTAAACCAGAGTTCAAGGGCATGAGTTAGTGAGTTGACACCTTCAGAGAGTTGGAGCACAGCCCATCTTCCTTTTTTGCCCAGAAGACTTGAGTGAGAACATGTGGCCCAGCCCTTGTGCAGTGACTGGCTGGTCCACCACTACAGCCGTAGAGAAGCAGCTGGAGAGTGGTGAGCAAGTTCACGCCAGACCAGAAGAAGAATACTTCATTGTGTATATGGCAAGAGGGTGTCAGGCTGCCCTAGCAATTAGATGGGGCATTGAGCTACAGGTCGCCATGTATGAGAAATATTATACAGTGAGGATAAGTTTTCTGCGTGTGTAGAGTTTCTGTCTGTAGTTTTTGTACCATGTGAAGGAGAGATGGCCAGATTGGCCAGTGTACAGTTCTGGGCTCTAATGGTCTTCCTTCCATACCATCCTCTCCCTTCTGGGACCTCAGACAGAAAACTGGCCTGAGCTGTGGTCCTAACACAGTTTCCTGTGGCTACAG
Seq C2 exon
AACTTCTGGAGGTTCATATTCCGGAAGAGCCTGCCATCCACCTCCCTCTGTCAAATGGATTTTGCTGTCCTAGGCCTCGGGGATTCCTCATATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(18.1=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]