GgaINT0126428 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1343437-1344105:+
Coord C1 exon
chr17:1343437-1343514
Coord A exon
chr17:1343515-1344007
Coord C2 exon
chr17:1344008-1344105
Length
493 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CCTGGCCCTGTCCTTTGCAGATG
3' ss Score
12.78
Exon sequences
Seq C1 exon
GCGAACCTCATCAATGAGCTGTTGGTGGTATTTGTCTGTGCAACCACTGGCCAGGGTGACCCACCCGACAACATGAAG
Seq A exon
GTAGGATACATTCTGTCCATGTTACTTTTGTGTATCTGATCCACTGATCTGATTCATTCCTCCAAGTATCTTAAGTGCTATTTTTGGGGGGGAGAGGACACTTTTGGGGCAGCATGCAGTGTAAAGCAGATGTTGGCTTAGTCAGAATGGCCCACCAGAAACTGTCTTCAGCCATAGTCCCCTACTGCCAACCTTCATAGGGCTAAGGAGCATCTTATGTTACTGCTGGAATGCAGGCTGGTGAGATTTCAGCAGCTTTGGCAGCTAAGAGGGACCCTGCCAAAGTAACATTCTCAGGTGTGCAGAGGGCTCACAGTGCACTGTCTCCCTCCCATTGCCAGTATAGCTGCTTTCAGGGTCACTTCTGCAGAAGACTGTGCTCCCCCCTCCGTCAGGACTCAGCAGAGGGCTGAAGGAGTGCTGTGAGTGTGTGCCAGCAGGCAGGGAAGGCATCTGTGCACAGCAGGGTGACTCCTGGCCCTGTCCTTTGCAG
Seq C2 exon
ATGTTCTGGCGGTTTCTGTTCCGGAAGAACCTGCCGCCTACTTCCCTTTGCCAGATGGACTACGCCGTGCTGGGCCTTGGTGATTCCTCCTATCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(18.1=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]