DreINT0103034 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31891470-31891719:+
Coord C1 exon
chr5:31891470-31891547
Coord A exon
chr5:31891548-31891621
Coord C2 exon
chr5:31891622-31891719
Length
74 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
GTAATATTTGCTGCTTATAGAAA
3' ss Score
4.63
Exon sequences
Seq C1 exon
GCTAACCTGATTTCCGAGTCTCTGGTGGTGTTTGTCTGTGCCACCACAGGACAGGGGGACCCTCCAGACAATATGAAG
Seq A exon
GTCAGACTTAAAATTACAAAATTTATGCACAACAGGTTTAAAGTGTTAAATTCTGTAATATTTGCTGCTTATAG
Seq C2 exon
AAATTCTGGAGGTTTCTGTTCAGGAAGTCTTTGCCAGCTGATTCTCTTAGTCGTCTTGACTGTGCTGTGCTGGGTCTTGGAGACTCTTCGTATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(18.1=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGATTTCCGAGTCTCTGGT
R:
GGATACGAAGAGTCTCCAAGAC
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]