DreEX6014338 @ danRer10

Exon Skipping

Gene

ENSDARG00000052094 | notch1b

Description

notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]

Coordinates

chr5:65017049-65020722:-

Coord C1 exon

chr5:65020151-65020722

Coord A exon

chr5:65017370-65017804

Coord C2 exon

chr5:65017049-65017197

Length

435 bp

Sequences

Splice sites

3' ss Seq

TCTCCTCTTCTTTCTCCTAGTCC

3' ss Score

10.01

5' ss Seq

AGGGTAAGT

5' ss Score

10.45

Exon sequences

Seq C1 exon

TGCGTTTCTGGTCACAAGAGTCCCAAATGCCTGTGCACCCCTGCTTTCACTGGTCCCGAGTGCCAGGATCCCAGCGGAGGCCACTGCACCACTAACCCCTGCTATAACGGAGGCACGTGCGAGTATATAACCGAGGAGCCGTATTACCACTGCATCTGTCCCACCAACTTCAACGGCCTCTTCTGCCACATCCTGGACTGGAGTTTTCCAGGCGGCACTGGTCAGGACATCACGCCGGCTCCTAAGGTGTCGGTCAGCTGCGAGATTGAGCAGTGTAAAGTCAAGAAGGGCAATAAGATCTGTGACAGCGCATGTAATAATTACGCCTGCGATTGGGACGGTGGCGACTGTTCGCTGAACTTTAATGACCCATGGAAGAACTGTTCGGCGGCTCTGCAGTGCTGGCGCTATTTTAATAACGGGAAGTGTGATGAACAGTGCCACAACACGGGATGCCTCTATGATGGGTTCGACTGCCAGAGAGTGGAGGCACAGTGCAA

Seq A exon

TCCACTATACGATCAGTATTGCAAGGACCACTTTGCAGACGGCTACTGTGACCAGGGCTGCAATAATGCAGAGTGTGAATGGGACGGCCTGGACTGCGCTAACGACACCCCCGAGAAGCTGGCTGCAGGACTGCTGGTTGTGGTGGTCCACATTCACCCTGATCAGCTCCGAAACAACTCGTTCGGGTTTCTGCGGGAGCTCAGCCGAGTGCTCCACACCAACGTGGTTTTCCGGCGGGATAGCAAGGGGCAAGAAATGATCTACCCGTATTACGGCAATGAGCAGGAACTGAAGAAACACAACATCAAACGATCACTAGACGGCTGGAACGATGCTTCTAGCGATGTCTTGAGCTCGATGAAAAACAGCATTTACAATATAGTAGTGGAAGGAGGGAGAAAACGCAGAGAACTGGAGAAGATACAAGTCAAAGG

Seq C2 exon

CTCCGTGGTTTATCTGGAGATTGACAACCGGCAGTGCTACCAGCAAACCTCCGAATGCTTCCAGAGCGCCAACGACGCGGCGGCGTTCCTCGGAGCGCTGGCTTCCAGCGGCAGTCTGAAAATGCCTTACGTCATCGAGGCCGTCACAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000052094-'28-30,'28-29,29-30=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF0000822=EGF=PD(14.7=2.6),PF0000822=EGF=WD(100=15.7),PF0000822=EGF=WD(100=17.3),PF0006612=Notch=WD(100=19.4),PF0006612=Notch=WD(100=19.9),PF0006612=Notch=PU(15.0=3.1)

A:

PF0006612=Notch=PD(82.5=22.6),PF068168=NOD=WD(100=39.0),PF076847=NODP=PU(4.8=2.1)

C2:

PF076847=NODP=FE(79.4=100)

Main Inclusion Isoform:

ENSDARP00000137615