DreEX6014631 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68192857-68199444:-
Coord C1 exon
chr5:68199348-68199444
Coord A exon
chr5:68197371-68197599
Coord C2 exon
chr5:68192857-68192985
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTGTGTGGCTCAGATT
3' ss Score
6.68
5' ss Seq
GAGGTCATG
5' ss Score
1.2
Exon sequences
Seq C1 exon
GTGGAACAGCTCCTGCCCAGTGGGAAGATATAACTGGCACCACCAAACTGGCGTATTCCAATGACTGTGCCAGTTTCACCACCAACGTCTCTGCCCG
Seq A exon
ATTCTGGCTGGCGGACTGTCCTCGGACTGCGGAGGCCGTGTCCTTTGCCAACCTCCTGTACCGCGAGCTGTCGGCCGTGCCGTACATGGCCAAGTTTGTAGTGTTTGCGAAGATGAATGAAGCTCGCGAGGGTCGACTCCGCTGCTACTGCATGACGGATGACAAGATGGACAAAACCCTGGAGCAGCACGAGAACTTCTCGGAAGTGGCTCGCAGCAGAGACATCGAG
Seq C2 exon
GTGATGGAGGGAATGCCGCTGTATTTGGAGTGTTCAGGAAACTTGGTTCCTATAAGAAAAGCAGCCCAGCAGCCTCGCTGTTTCAGCTTCCAGGCCTTTAAAGACAACAGACTGCCTGTGTCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093-'35-40,'35-39,36-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCTCCTGCCCAGTG
R:
CTTGACGGACACAGGCAGTC
Band lengths:
223-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]