GgaEX1065910 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2619757-2621140:-
Coord C1 exon
chr22:2621044-2621140
Coord A exon
chr22:2620671-2620899
Coord C2 exon
chr22:2619757-2619831
Length
229 bp
Sequences
Splice sites
3' ss Seq
CTGACCCACCCCTCCCACAGGTT
3' ss Score
10.75
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GAGGGACAGCACAAGCTCAGTGGGAAGACATCACAGGCACCACAAAGCTGGTCTATGAAAAAGAGTGTGCTAACTTTACCACCAATGTGTCTGCCAG
Seq A exon
GTTCTGGCTGGCTGACTGCCCGCGCACTGCTGAGGCTGTGCACTTTGCCACCGTGCTGTACAAGGAACTGACGGCTGTGCCCTACATGGCCAAATTTGTGGTGTTTGCTAAGATGAACGATGGACGGGAAGGCCGGCTGCGCTGCTACTGCATGACTGATGACAAGGTGGACAAGACTTTGGAGCATCATGAGAACTTCACTGAGGTGGCCCGCAGCAGGGACATTGAG
Seq C2 exon
GCTCTCTGAGCAGCACCGACAGGGCAGACCAGAAGATGATCGACATTGCAGAGCAGCTTGGCCTCAGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX2-11/14=10-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053117=Death=PU(19.0=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAGCTCAGTGGGAAGAC
R:
CTGCCCAGCTGAGGCCAA
Band lengths:
164-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]