DreEX6014635 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68159377-68182687:-
Coord C1 exon
chr5:68182556-68182687
Coord A exon
chr5:68178439-68178603
Coord C2 exon
chr5:68159377-68159391
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTCACCACTCTAGTGG
3' ss Score
8.27
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGTTGGGACGGGAACTGCAGTTTAATGTAGATGAAATAAATAAGATCCGTGTGGAGAATCCCAACTCCCTTTTAGAGCAGAGCTCAACGCTGCTCAACCTGTGGGCCGCCCGAGAGGGGAAGAGAGCCAAAA
Seq A exon
TGGACAGCCTGTACGTGGCCCTCAAGAGCATCGACCGAGTGGACATTGTGAACATGATGGAGGGCCAGGGAGGACCACCGGCGGGTCAGCAGGGGGGCTGGGAGCAGGACGCTTCTAGGTCTAGGCATCACGACCGAGACCATCTCTCACCTGGAATCACAAATG
Seq C2 exon
CATATAGTACATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093-'42-50,'42-47,44-50=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.503 C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=FE(53.1=100)
A:
PF0053117=Death=PD(27.2=39.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]