GgaEX0004701 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2667468-2669877:-
Coord C1 exon
chr22:2669746-2669877
Coord A exon
chr22:2669409-2669555
Coord C2 exon
chr22:2667468-2668020
Length
147 bp
Sequences
Splice sites
3' ss Seq
GACACCGGCTTCCCCTGCAGTTG
3' ss Score
8.78
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGCTGGCACGTGAGCTGCAGTTTGGGGTGGATGACATCAACAGGATTCGTGTGGAGAACCCTAACTCCTTGCTGGAGCAGAGCATAGCCTTGCTTAACCTCTGGGTCAGCCGCGAGGGCAAGGGTGTCAAAA
Seq A exon
TTGAGAACCTGTACACAGCGCTGAGGAACATTGACCGCAGCGAGATCATCAGCACGTTGGAGGGCTCCGGCCGGCAGAGCCGCAGCATGAAGGGCAGCTGGCGTTACATGGACAGGGACTATTCACTCTCGCCCTCCCAGATGAATG
Seq C2 exon
GTTACGCTTCGCTGCAGGACGAGCTGCTCTCCCCTGCCTCCCTGCATTATATGCTGCCATCCCCTCTGCGTGCTGACCAGTACTGGAACGAGGTGGCCATCATGGACGCCATCCCCATGGCCGCCACTGAGCAGGACGCCCTGATGGAGATGTCTGACATGCAGGTGTGGTCCTCAGGGCTCACCCCTTCACTGGTGACGGCTGAGGACTCCTCTCTGGAGTGCAGCAAGGCTGAGGACTCGGATGCTACAAGCGAAGGTCGTTTCCCAGGGCACCTTCTGACAGATGCACATGTCCCAGACCACATGGGCTCTATGGACTTAGTTGAGGATGACACAGTGGACTCAGACGCCATGAACGGGCTGATTGAACTGCTAGAGCAGGAGGAGGGGCAGAGGCCAGAGGGGAAGATGCCAGCCAGCGACCACCAGCTAGGGACTGGAGAGCAGAACCCAGAGAGTGAAGTCTCTTTTGTTTCAGTTCAACAGAAGGTACAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'43-41,'43-40,44-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.652
Domain overlap (PFAM):
C1:
PF0053117=Death=FE(52.4=100)
A:
PF0053117=Death=PD(27.4=46.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTCGTGTGGAGAACCCT
R:
TCAGACATCTCCATCAGGGCG
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]