DreEX6014832 @ danRer10
Exon Skipping
Gene
ENSDARG00000028688 | exosc2
Description
exosome component 2 [Source:ZFIN;Acc:ZDB-GENE-050417-27]
Coordinates
chr5:71355764-71356783:+
Coord C1 exon
chr5:71355764-71355809
Coord A exon
chr5:71355918-71356007
Coord C2 exon
chr5:71356718-71356783
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTGCATCTCTAAATGTTAAGGTG
3' ss Score
4.3
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTATAACGGAGAGGTGGGTGATGTGGTTGTGGGCAGAATCACTGAG
Seq A exon
GTGCAGCAGAAGCGATGGAAAGTGGAGACTAACTCGCGTCTGGATTCAGTGCTGCTGCTGTCGGCGGTCAATCTGCCTGGAGGAGAGCTG
Seq C2 exon
AGACGTCGTTCCACGCAGGATGAGCTGGCCATGAGGGATTATCTGCAGGAAGGAGATCTCATCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028688-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAACGGAGAGGTGGGTGATGT
R:
ACTGATGAGATCTCCTTCCTGCA
Band lengths:
111-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]