MmuEX6100421 @ mm9
Exon Skipping
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31530035-31531424:+
Coord C1 exon
chr2:31530035-31530080
Coord A exon
chr2:31530215-31530304
Coord C2 exon
chr2:31531359-31531424
Length
90 bp
Sequences
Splice sites
3' ss Seq
CACATTTATTTCTCTCACAGGTT
3' ss Score
9.95
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATACAATGGAGAGGTCGGAGACATTGTAGTGGGGAGAATCACAGAG
Seq A exon
GTTCAACAGAAGAGGTGGAAGGTAGAGACCAATTCCAGGCTGGACTCCGTCTTGCTCCTCTCATCCATGAACCTACCTGGGGGAGAGCTG
Seq C2 exon
AGGAGAAGGTCTGCGGAGGATGAGCTGGCCATGAGAGGCTTCTTGCAGGAAGGCGACCTCATCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAATGGAGAGGTCGGAGA
R:
ACTGATGAGGTCGCCTTCCTG
Band lengths:
112-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: