DreEX6015129 @ danRer10
Exon Skipping
Gene
ENSDARG00000088795 | TGFBR3L
Description
transforming growth factor, beta receptor III-like [Source:HGNC Symbol;Acc:HGNC:44152]
Coordinates
chr3:5802836-5808310:-
Coord C1 exon
chr3:5808241-5808310
Coord A exon
chr3:5808098-5808151
Coord C2 exon
chr3:5802836-5802931
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTCATAGGTA
3' ss Score
10.35
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
Exon sequences
Seq C1 exon
TGTAAGGACAGAAATCTGTCTCGGCCCGTGTTGGTCACATATCCTGCTGGCTTTCTGGCGCCCCCTGCTG
Seq A exon
GTAAACTTGCTCAAACGCCTGCTGAGATGTCGGGACAGGCTCCATCGGCCACCG
Seq C2 exon
GCGCAGTGGAAGGCTCTGTGCTGCTAGTGGTGTTCGCTGCGTTTCTGATGGGGTTGTCTCTGATGGGGGCGCTGTGGTGCATCTATACACACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088795-'17-18,'17-17,18-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.684 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGTGTTGGTCACATATCC
R:
TGTATAGATGCACCACAGCGC
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]