DreEX0008796 @ danRer10
Exon Skipping
Gene
ENSDARG00000088795 | TGFBR3L
Description
transforming growth factor, beta receptor III-like [Source:HGNC Symbol;Acc:HGNC:44152]
Coordinates
chr3:5801330-5808151:-
Coord C1 exon
chr3:5808098-5808151
Coord A exon
chr3:5802836-5802931
Coord C2 exon
chr3:5801330-5801662
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGCTTGTGTTCAGGCG
3' ss Score
8.64
5' ss Seq
CCGGTAAAA
5' ss Score
6
Exon sequences
Seq C1 exon
GTAAACTTGCTCAAACGCCTGCTGAGATGTCGGGACAGGCTCCATCGGCCACCG
Seq A exon
GCGCAGTGGAAGGCTCTGTGCTGCTAGTGGTGTTCGCTGCGTTTCTGATGGGGTTGTCTCTGATGGGGGCGCTGTGGTGCATCTATACACACACCG
Seq C2 exon
GGAGGCATGATTTGACCCAGAGAATCAGTGTTATAGAGACCACTGTACCGAACCCCGGCTTCATAAACCCGCCAATACTAATGGAGGAAACCAGCAGTTTCCATGATGTCAACGACACACACAACAACTTTTAGGAAATGAGCAAAAGCAAACATGTTTGATGTGATTTGTGCATTCTGTAATCAGTATCTGTAAGTGAGCAGTTTCCTGTATTTTGTGATCGATGTTTTTGTTTTTCCTCTTTTATTCCTGCTTTTGATTTGCATTATGGGATCTTGATCTTTCTTCTTTCAACTCTTAACCTTGAAAAGTGTGAAAAGGTGTATTTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088795_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAACGCCTGCTGAGATGT
R:
GTGTGTGTCGTTGACATCATGG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]