BtaEX6016637 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024269 | TGFBR3
Description
transforming growth factor, beta receptor III [Source:HGNC Symbol;Acc:HGNC:11774]
Coordinates
chr3:51854132-51866717:+
Coord C1 exon
chr3:51854132-51854173
Coord A exon
chr3:51856478-51856585
Coord C2 exon
chr3:51866599-51866717
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTCTTATCATTATAGAGA
3' ss Score
6.13
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAACAGGTCCAAGTATTAAGGAACCGATTCCAATTACTCCAC
Seq A exon
AGATTTTCCATGGTCTGGACACCCTAACCGTGATGGGCATCGCGTTCGCAGCCTTTGTGATTGGAGCGCTGCTGACGGGGGCCTTGTGGTACATCTATTCTCACACAG
Seq C2 exon
GAGAGACAGCAGGAAGGCAGCAAGTGCCCACGTCCCCGCCAGCTTCAGAGAACAGCAGCGCAGCCCACAGCATTGGCAGCACGCAGAGCACACCCTGCTCCAGCAGCAGCACAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024269-'38-26,'38-25,39-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTCCAAGTATTAAGGAACCG
R:
CTAGGCTGTGCTGCTGCTG
Band lengths:
159-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]