DreEX0078505 @ danRer10
Exon Skipping
Gene
ENSDARG00000099979 | tgfbr3
Description
transforming growth factor, beta receptor III [Source:ZFIN;Acc:ZDB-GENE-120215-125]
Coordinates
chr6:24473400-24498943:+
Coord C1 exon
chr6:24473400-24473556
Coord A exon
chr6:24484995-24485102
Coord C2 exon
chr6:24498715-24498943
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATTATATTTCTTCTTGCAGGCA
3' ss Score
10.68
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGTATGTTACCGGATGAAGCCTGCACTTCCCTCAGTATAGAGAGCATCCTACTCATCATGATGAACACAAAGACCTTGACCAAACCAATAGTGGTCATATCTGACGACATGCCAGTCACTATTAAGGTCCCTCGGGAGGAAAGTCCACCACGTCAAG
Seq A exon
GCATCATATATGTTTTGGACACCCCAACTGTGGTGGGCATCGCGTTTGCTGCCTTTGTAATTGGAGCCCTTCTGACTGGAGCTCTATGGTTTATCTACTCGCATACAG
Seq C2 exon
GTGGCACAGCTGCAGGACAGCAGGTGCCGAGTTGTCCGCCAGTGTCTGAAAACAGCAGCGCGGCTCACAGTATCGGCAGCACACAGAGCACACCGTGTTCAAGCAGCAGCAACGCGTAGAACAGCTGGACTGACTTCTGCTTGCAGTGCCATTTGTGGAAGAACATGTGAATAAGTAGCACAACAGGCCTTTTTATTTTCATTTTTTGAACTGAAATGTTTAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099979-'18-25,'18-23,19-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.744
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(0.7=3.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGCCTGCACTTCCCTC
R:
CTTGAACACGGTGTGCTCTGT
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]