RnoEX6041442 @ rn6
Exon Skipping
Gene
ENSRNOG00000002093 | Tgfbr3
Description
transforming growth factor beta receptor 3 [Source:RGD Symbol;Acc:61821]
Coordinates
chr14:3668337-3682545:+
Coord C1 exon
chr14:3668337-3668387
Coord A exon
chr14:3671090-3671197
Coord C2 exon
chr14:3679355-3682545
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTTCTCTCTTCTAGAGA
3' ss Score
11.37
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AAAATGTTCCCAGCACTAAGGATTCCAGTCCAATTCCTCCTCCTCCTCCAC
Seq A exon
AGATTTTCCATGGCCTGGACACGCTCACCGTGATGGGCATTGCATTTGCAGCATTTGTGATCGGAGCGCTCCTGACGGGGGCCTTGTGGTACATCTACTCCCACACAG
Seq C2 exon
GGGAGACAGCACGAAGGCAGCAAGTCCCTACCTCGCCGCCAGCCTCGGAGAACAGCAGCGCGGCCCACAGCATCGGCAGCACTCAGAGTACCCCCTGCTCTAGCAGCAGCACAGCCTAGGTGGACAGACAGACGCCCGCCCACCGCAGCCAGGGCAGGGCCCGATGCCAGTGCTGCGTGTCCACAGTCGGAAGTCTTGATCTGGGCTCCCTGTAAAGAAAGAGTGAATTTCAGTATACAGACAGCCAGTTCTACCCACCCCTTACCACGGCCCACATAAATGTGACCCTGGGCATCTGTCACACGAAAGCTAAGCTGGTGGCCTTCCCCACCAGCCCCTCGCAGGATGGGGGTTTCAATGTGAAACATATGCCAGTTTTGTTTTGTTTTTTTAATGCTGCTTTGTCCAGGTGTCCAAACATCCATCATTTGGGGTGGTCTGTTTTACAGAGTAAAGGAGGCGGTGAAGGGACGTCAGCTAGTGTGTAGAGCCAAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002093-'29-26,'29-24,31-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=0.000 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGCACTAAGGATTCCAGT
R:
AGCCCAGATCAAGACTTCCGA
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]