MmuEX6019331 @ mm9
Exon Skipping
Gene
ENSMUSG00000029287 | Tgfbr3
Description
transforming growth factor, beta receptor III [Source:MGI Symbol;Acc:MGI:104637]
Coordinates
chr5:107535589-107550426:-
Coord C1 exon
chr5:107550379-107550426
Coord A exon
chr5:107547438-107547545
Coord C2 exon
chr5:107535589-107538776
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTCCCCTCTTCTAGAGA
3' ss Score
9.64
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AAAATGTTCCAAACATGAAGGAGTCCAGTCCGGTTCCTCCTCCTCCAC
Seq A exon
AGATTTTCCACGGCCTGGACACGCTCACCGTGATGGGCATTGCGTTTGCAGCATTTGTGATCGGAGCACTCCTGACGGGGGCCTTGTGGTATATCTACTCCCACACAG
Seq C2 exon
GGGAGACGGCACGAAGGCAGCAAGTCCCTACCTCGCCACCAGCCTCGGAGAACAGCAGCGCAGCCCACAGCATAGGGAGCACTCAGAGCACTCCCTGCTCTAGCAGCAGCACGGCCTAGGTGGACAGATGGACGCCGCTGCCTAGGTGGACAGACGGATGCCTGCCACCGCCGGGGCAGGGCCAGATGCCGATGCTGGGTGTCCAGACTCAGAAGGCTTGATCTGGGTTCCCTGTAAAGAGAGAGTGAATTTCAGTATACAGACAGCCTGCTCTACCCACCCCTTCCTTACCACGGCCCACGTAAATGTGACCCTGGACATCTGTCACACGAAAGCTAAGCTGGTGGCCTTCCCCGCCAGCCCCTCGCAGGATGGGGGTTTCAATGTGAAACATATGCCAGTTTTTGTTCTTTTTTTTTTTTTTTATGCTGCTTTGTCCAGGTGTCCAAACATCCATCATTTGGGGTCGTATGTTTTAAAGAGTAAAGGAGACGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029287-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=0.000 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGAGTCCAGTCCGGTT
R:
CCTTCTGAGTCTGGACACCCA
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: