GgaEX0008543 @ galGal4
Exon Skipping
Gene
ENSGALG00000006038 | TGFBR3
Description
transforming growth factor beta receptor type 3 precursor [Source:RefSeq peptide;Acc:NP_989670]
Coordinates
chr8:13387726-13400096:+
Coord C1 exon
chr8:13387726-13387761
Coord A exon
chr8:13389856-13389963
Coord C2 exon
chr8:13396297-13400096
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTGCCTTTTAGCTG
3' ss Score
10.54
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTCTTCTCTTCCAAAATCAAATGTGAGACAACCGT
Seq A exon
CTGTTTTCTATGGCTTGGACACTCTTACCGTCGTGGGCATTGCTTTTGCAGCATTTGTAATTGGAGCCCTGCTAACAGGAGCACTGTGGTTTATCTACTCTCACACAG
Seq C2 exon
GGGAAGCAGCTGGAAGACGGCAGGTCCCTACATCCCCACCAGCCTCTGAGAACAGCAGCGCAGCACACAGCATTGGCAGCACGCAGAGCACTCCTTGTTCCAGCAGCAGTGCAACCTAACTGTGGGAAGAGCAACACTGAGGAACAGCATAGGAGTGCAGAGGTTCAAAGGACTGTGTGTTGTTCACAACAGCGTTTTAACACTCAACGTTTGGTTCCTTTATGAAAACATGAGGACGGATTGTTCTACAGAAAAAAAGACTGATTTTCTTTTGGGGAAGCCACTATGTGTATGTGTGTGTACACGTGCACACAATGCATGGGTAAGCACAGCCTTTTGGATCTATAGCGTGTTATGCTACATGTGACAAAGCTACTAATGTTACAGTACTGCAACCTGTTCTAGGGGTCTCTGGGCCCTAAATGTGAAATCTTTGCCAGTTTGGAAAAATGCTGCTTTGTCTATATGACTTTTTTTCCCTAAACCGTCTCATTGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006038_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.000 C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000033354fB12837
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAATCAAATGTGAGACAACCGT
R:
AGGAACCAAACGTTGAGTGTT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]