GgaEX0008543 @ galGal3
Exon Skipping
Gene
ENSGALG00000006038 | Q90998_CHICK
Description
NA
Coordinates
chr8:15144530-15153887:+
Coord C1 exon
chr8:15144530-15144565
Coord A exon
chr8:15146660-15146767
Coord C2 exon
chr8:15153101-15153887
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTGCCTTTTAGCTG
3' ss Score
10.54
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTCTTCTCTTCCAAAATCAAATGTGAGACAACCGT
Seq A exon
CTGTTTTCTATGGCTTGGACACTCTTACCGTCGTGGGCATTGCTTTTGCAGCATTTGTAATTGGAGCCCTGCTAACAGGAGCACTGTGGTTTATCTACTCTCACACAG
Seq C2 exon
GGGAAGCAGCTGGAAGACGGCAGGTCCCTACATCCCCACCAGCCTCTGAGAACAGCAGCGCAGCACACAGCATTGGCAGCACGCAGAGCACTCCTTGTTCCAGCAGCAGTGCAACCTAACTGTGGGAAGAGCAACACTGAGGAACAGCATAGGAGTGCAGAGGTTCAAAGGACTGTGTGTTGTTCACAACAGCGTTTTAACACTCAACGTTTGGTTCCTTTATGAAAACATGAGGACGGATTGTTCTACAGAAAAAAAGACTGATTTTCTTTTGGGGAAGCCACTATGTGTATGTGTGTGTACACGTGCACACAATGCATGGGTAAGCACAGCCTTTTGGATCTATAGCGTGTTATGCTACATGTGACAAAGCTACTAATGTTACAGTACTGCAACCTGTTCTAGGGGTCTCTGGGCCCTAAATGTGAAATCTTTGCCAGTTTGGAAAAATGCTGCTTTGTCTATATGACTTTTTTTCCCTAAACCGTCTCATTGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006038-'15-20,'15-19,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.000 C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAATCAAATGTGAGACAACCGT
R:
AGGAACCAAACGTTGAGTGTT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]