MmuEX6019331 @ mm10
Exon Skipping
Gene
ENSMUSG00000029287 | Tgfbr3
Description
transforming growth factor, beta receptor III [Source:MGI Symbol;Acc:MGI:104637]
Coordinates
chr5:107106570-107121407:-
Coord C1 exon
chr5:107121360-107121407
Coord A exon
chr5:107118419-107118526
Coord C2 exon
chr5:107106570-107109757
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTCCCCTCTTCTAGAGA
3' ss Score
9.64
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AAAATGTTCCAAACATGAAGGAGTCCAGTCCGGTTCCTCCTCCTCCAC
Seq A exon
AGATTTTCCACGGCCTGGACACGCTCACCGTGATGGGCATTGCGTTTGCAGCATTTGTGATCGGAGCACTCCTGACGGGGGCCTTGTGGTATATCTACTCCCACACAG
Seq C2 exon
GGGAGACGGCACGAAGGCAGCAAGTCCCTACCTCGCCACCAGCCTCGGAGAACAGCAGCGCAGCCCACAGCATAGGGAGCACTCAGAGCACTCCCTGCTCTAGCAGCAGCACGGCCTAGGTGGACAGATGGACGCCGCTGCCTAGGTGGACAGACGGATGCCTGCCACCGCCGGGGCAGGGCCAGATGCCGATGCTGGGTGTCCAGACTCAGAAGGCTTGATCTGGGTTCCCTGTAAAGAGAGAGTGAATTTCAGTATACAGACAGCCTGCTCTACCCACCCCTTCCTTACCACGGCCCACGTAAATGTGACCCTGGACATCTGTCACACGAAAGCTAAGCTGGTGGCCTTCCCCGCCAGCCCCTCGCAGGATGGGGGTTTCAATGTGAAACATATGCCAGTTTTTGTTCTTTTTTTTTTTTTTTATGCTGCTTTGTCCAGGTGTCCAAACATCCATCATTTGGGGTCGTATGTTTTAAAGAGTAAAGGAGACGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029287-'35-34,'35-28,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=0.000 C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGAGTCCAGTCCGGTT
R:
CCTTCTGAGTCTGGACACCCA
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types