DreEX6015434 @ danRer10
Exon Skipping
Gene
ENSDARG00000104593 | cyp2k18
Description
cytochrome P450, family 2, subfamily K, polypeptide 18 [Source:ZFIN;Acc:ZDB-GENE-040426-1584]
Coordinates
chr3:12562121-12563983:+
Coord C1 exon
chr3:12562121-12562305
Coord A exon
chr3:12562518-12562659
Coord C2 exon
chr3:12562984-12563983
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTCCAATTTTATAGGGG
3' ss Score
8.32
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATCGAGTTCAAGAGGAGATTGACAGAGTGATTGGTGGACGTCAGCCGGCGGTGGAAGACAGGAAGAAATTACCATATACAGATGCTGTCATTCACGAAATTCAGAGATTTGCCAACATTGTACCACTGAATCTTCCACACACAACTAGCTGCGACATTACCTTCAATGGGTACTTCATCAAGAAG
Seq A exon
GGGACCACTGTTATTCCTCTGCTGACGTCTGTTCTGAAGGATGAAAGTGAATGGGAGAAACCAAACAGCTTTTACCCAGAACACTTCCTTGATGAGAAGGGCCAGTTCGTCAAGAGAGATGCTTTCATGCCCTTTTCTGCAG
Seq C2 exon
TCATTCTGACATTGATGAGCGATGCTAGAGCCATCGAATAAAGCAGCAGTGACTATGGTTTCAAATCCACATGGAGCCTACCTAGATATTTCAACAACAGCCTCTCTTTCTCAGGGCGGAGGATTTGTCTGGGAGAGAGTTTAGCCAGGATGGAGCTCTTCCTGTTCTTCACATCTCTCCTTCAGAGCTACCGCTTCACAACTCCACCTGGAGTGTCTGAAGATGAACTGGATCTCAAAGGAATTGTTGGAATCACGTTGAATCCGTCTCCACACAAGCTGTGTGCAATCAGACGCTAATGATCCAAGAAAATATCAGCAGAAGAAAACAAGTACATATGAGATATGCAAGTCCTCCACTTATTTTTCTTTTACCGTTGGTCTCCCAAAATGGCTCACCGTCCTGAACCACATGATGACAAGGTAAAAATGAAACTCTTAATGAGCTACTGGTTTAACACTGCAGCTACATTGAGCCAACTCAACATTCAGTTCCCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104593-'7-7,'7-6,8-7=AN
Average complexity
A_C3
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.2=100)
A:
PF0006717=p450=PD(11.5=95.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACACAACTAGCTGCGACA
R:
GGTGGAGTTGTGAAGCGGTAG
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]