MmuEX1012578 @ mm10
Exon Skipping
Gene
ENSMUSG00000098867 | Gm27463
Description
predicted gene, 27463 [Source:MGI Symbol;Acc:MGI:5530845]
Coordinates
chr15:82635616-82639441:-
Coord C1 exon
chr15:82639265-82639441
Coord A exon
chr15:82638039-82638180
Coord C2 exon
chr15:82635616-82636998
Length
142 bp
Sequences
Splice sites
3' ss Seq
CACCATGTGCCTTCTGCCAGGGG
3' ss Score
7.46
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
GTTCTGAACACATTTCCAATTCTCCTGCACATCCCAGGGTTGGCTGACAAAGTCTTCCCTGGGCAAAAGACATTTCTCACCCTGGTAAATAAGCTGGTGACTGAGCACAAGAGGACCTGGGACCCTGACCAGCCACCTCGTGACCTGACTGATGCCTTTCTGGCTGAAATGGAGAAG
Seq A exon
GGGACGACCCTCATCCCCAACCTGTCCTCCGCGCTAAAGGATGAGACTGTCTGGGAGAAGCCCCTCCGCTTCCATCCTGAACACTTCCTGGATGCCCAGGGCCATTTTGTGAAGCCTGAGGCCTTCATGCCATTCTCAGCAG
Seq C2 exon
GTCGTCGAGCATGCCTGGGGGAGCCCCTGGCCCGCATGGAGCTCTTCCTCTTCTTCACCTGCCTCCTGCAGCGCTTTAGCTTCTTAGTGCCTGCTGGACAGCCCCAGCCCAGTGACTATGGCATCTTTACATTTCTGGTTAGCCCCTCCCCCTATCAGCTCTGTGCATTCACACGTTAGCAGGCAACAAATCCTAGTCCAGAAACTAGCTTAGAGTCACACGCACAATAAACCAGTTTTGTGGCTGCCACTTCTTTTCTTATTCAAATCTCATTCCTGTCTGTGTTCAGTCCTCAGAGAACAGTCCTCGACCACACTCTTGCCTGAACCTTGCTTAATGGACATCTTGAGTGTTAAGAGAAAGGGGTAACTGTCACACCAGTCCCAATAGAATCTGTGTGACAAGTTCCACAGACTTAGGCAAAAACTGCAAAAGGAGGAGGCCTCCTGGAACTAGTTATAGAACTCTTGGCCAGAGCAAAATATTGAGCTGTAATTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000098867_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGGTGACTGAGCACAAG
R:
CTGATAGGGGGAGGGGCTAAC
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types