GgaEX6012093 @ galGal3
Exon Skipping
Gene
ENSGALG00000003917 | F1P2F9_CHICK
Description
NA
Coordinates
chr14:2253279-2254671:+
Coord C1 exon
chr14:2253279-2253466
Coord A exon
chr14:2253952-2254093
Coord C2 exon
chr14:2254484-2254671
Length
142 bp
Sequences
Splice sites
3' ss Seq
GCATCTTTGATCCCTTGCAGGGT
3' ss Score
9.28
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GAAAAATTCAGGAAGAAATGAACCAGGTCATCGAGCCAGGGGAGATGCCGAGGCTGGAGGACCGGAAAAAGATGCCTTACACAGATGCAGTGATACACGAAATACAAAGATTTGCCAATATTGTCCCAATGGGTGTGTCACGATCAACACCTACTGATGTGAATTTCCGAGGCTACGTAATTCCTAAG
Seq A exon
GGTACAGAGATTATACCGCTGCTGACCTCTGCTCTGAATGACGAGCTGCACTGGAAAACCCCACATCAGTTCAACCCATCCCACTTCCTGGACGCTGATGGGAACTTTGTTAGGAGAGAGGCATTTATTCCATTCTCCATAG
Seq C2 exon
GACGAAGGGCTTGTGTTGGAGAAGGCCTGGCCAAAATGGAGCTGTTCCTCTTCTTCGCAGGCTTGCTCCGCAGATTTGTTTTCCAGCCCCCTCCAGGGGTGAACAAAGCAGAGCTAGATCTCACTGCTGATGTTGGCTTCACCCTGAGCCCCATGCCTCACCTGGTCTGTGCTGTGCCCTGCAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003917-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.4=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACCGGAAAAAGATGCC
R:
CTGCTTTGTTCACCCCTGGAG
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]