RnoEX6063666 @ rn6
Exon Skipping
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17383159-17383949:-
Coord C1 exon
chr12:17383765-17383949
Coord A exon
chr12:17383437-17383578
Coord C2 exon
chr12:17383159-17383346
Length
142 bp
Sequences
Splice sites
3' ss Seq
GGGATCCCTCTGCCTTACAGGGC
3' ss Score
7.75
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GTCGTGTGCAGGAGGAGCTGGACCGAGTGCTGGGCCCTGGGCAGCTACCTCAACCAGAGGACCAGCGAGCACTGCCCTATACCAGTGCTGTGCTGCACGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACGGCTGCTGACATCCAGCTGGGTGGCTACCTGCTCCCTAAG
Seq A exon
GGCACCCCCGTGATTCCTTTGCTGACCTCAGTGCTCCTGGACAAGACGCAGTGGGAGACTCCAAGCCAGTTCAACCCAAACCACTTTCTGGATGCCAAGGGATGCTTTATGAAGCGGGGAGCGTTCCTGCCTTTCTCCACTG
Seq C2 exon
GTCGCCGGGTCTGCGTTGGGGAGAGCCTGGCCAGGACAGAGCTCTTCCTGCTGTTTGCTGGCCTCCTCCAGCAGTACCATCTGCTGCCCCCACCCGGCCTCAGCCCCGCAGACCTGGATTTACGGCCTGCCCCAGCTTTTACCATGCGGCCACCCGCCCAGACCTTGCGCGTGGTGCCGAGATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.021 C2=0.081
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.5=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCCTATACCAGTGCTGT
R:
CAGGCCGTAAATCCAGGTCTG
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]