MmuEX0013362 @ mm10
Exon Skipping
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139356268-139357033:+
Coord C1 exon
chr5:139356268-139356452
Coord A exon
chr5:139356606-139356747
Coord C2 exon
chr5:139356846-139357033
Length
142 bp
Sequences
Splice sites
3' ss Seq
AGGACCCCTCTGCTTCACAGGGC
3' ss Score
6.21
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GTCGCGTGCAGGAGGAACTGGACCGAGTGCTGGGTCCTGGGCAGCTGCCTCAACCAGAGCACCAGCGAGCACTGCCCTACACCAGTGCTGTGTTGCATGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACAGCTGCTGACATCCAGCTGGGTGGCTACCTGCTCCCCAAG
Seq A exon
GGCACTCCTGTGATTCCTTTGCTCACTTCAGTCCTCCTGGACAAGACGCAGTGGGAGACCCCAAGCCAGTTCAACCCAAACCACTTTCTGGACGCGAAGGGGCGCTTTATGAAGCGGGGGGCCTTCCTGCCATTCTCCGCTG
Seq C2 exon
GTCGCCGGGTCTGCGTTGGGAAGAGCCTGGCCAGGACAGAGCTCTTCCTGCTGTTCGCTGGCCTCCTTCAGCGGTACCGCCTCCTGCCCCCACCCGGCCTCAGCCCTGCAGACCTGGATTTACGGCCTGCCCCAGCTTTCACCATGCGGCCTCCTGCCCAGACCTTGTGTGTGGTGCCGAGATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.5=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCACACTCCTGCCCCAT
R:
CACACACAAGGTCTGGGCAG
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types