GgaEX0026374 @ galGal3
Exon Skipping
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2263970-2266985:+
Coord C1 exon
chr14:2263970-2264154
Coord A exon
chr14:2264842-2264983
Coord C2 exon
chr14:2265249-2266985
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTGTCTTCTCCCAGGGT
3' ss Score
11.91
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
AAAAGGTGCAGGAGGAGATTGGAAGAACTGTCAAAGCTGGAAGCTGGGTGACGTACGAGGACCGCAAGAACATGCCATTTACAAACGCGGTGATCCACGAAGTGCAGAGGTTCATCACCCTCCTGCCCCACGTTCCCCGCTGCACTGCTGTGGACACCCACTTCAGGGGATACTTCCTTCCCAAG
Seq A exon
GGTATAATTGTCATCCCATCGCTCACCTCAGTGCTGCTGGATAAGACTCAGTGGGAGACACCACACCAGTTCAACCCCAACCACTTCCTTGATGCTGAAGGGAATTTTGTCAAGAGGGAGGCTTTCCTGCCCTTCTCCACAG
Seq C2 exon
GGCGAAGGAACTGCATCGGAGAGAGCCTCGCCAAGATGGAGCTGTTTGTCTTCTTTGTAGGGCTGCTGCAGACGTTCACTTTCCAACCTCAGCCGGGAGTTTCAGAGGCCGACCTGGACCTGACCGTCCCCGAAACGACTTTCACATTAAGGCCTCGGCCTCAGGCGACCTGTGCCATCCTGCACGAATAGCCAAGGCCTGCTGCGGGGCGGCCAAGCAGGGACGCTGCCAAGGCCCATCTTAGCTATGCTAGGGCTCATCACCCCATCCCGACATGCCACGCTCTGTCACATTTCCCTCCCACTGTCTCCGTCCACTCCCACCCCTACACTTCCCCATTAGGTCACTGACCCGCTCTTTGCTCCCATGCTGTGGGGGGGTGCAGTCAATCAATGAGAAAGCACAATCCTGGTGACCCTCCCAGAGAGAGACACTGAGCAGCTGAAGGACCAGGGGGTGTGTGTCCGTGAGATGTAGGTGTGACATCCACACTTCAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.1=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=PD(13.4=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCAGGAGGAGATTGGAA
R:
TGCAGCAGCCCTACAAAGAAG
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]