HsaEX6006787 @ hg19
Exon Skipping
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:20243]
Coordinates
chr7:1026983-1029276:+
Coord C1 exon
chr7:1026983-1027167
Coord A exon
chr7:1027913-1028054
Coord C2 exon
chr7:1028271-1029276
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGCCCCGGCTGCCCCCACAGGGC
3' ss Score
9.78
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCCGGGTGCAGGAGGAGCTAGACCGCGTGCTGGGCCCTGGGCGGACTCCCCGGCTGGAGGACCAGCAGGCTCTGCCCTACACAAGCGCCGTGCTCCACGAGGTGCAGCGGTTCATCACGCTCCTGCCGCACGTGCCCCGCTGCACCGCGGCCGACACACAGCTGGGCGGCTTCCTGCTCCCCAAG
Seq A exon
GGCACGCCCGTGATTCCCCTGCTGACCTCGGTGCTCCTGGATGAGACACAGTGGCAGACCCCAGGCCAGTTCAACCCCGGCCATTTCCTGGACGCGAATGGGCACTTTGTGAAGCGGGAGGCCTTCCTGCCTTTCTCTGCAG
Seq C2 exon
GCCGCCGCGTCTGTGTTGGGGAGCGCCTGGCCAGGACCGAGCTCTTCCTGCTGTTTGCCGGCCTCCTGCAGAGGTACCGCCTGCTGCCCCCGCCTGGCGTCAGTCCGGCCTCCCTGGACACCACGCCCGCCCGGGCTTTTACCATGAGGCCGAGGGCCCAGGCCCTGTGTGCGGTGCCCAGGCCCTAGGAGCTCCCCCAGCCCCCAGGTCCTCCTGACCACTCCCCTCCCAGCCCTGGGTCCTCCCACCCTCTCTCCTCCCACCCCACAGCTCGGACTGCTCTGGGAGGGCCCTGAGGACTCCCACCCTCACCCCCACCCCCACAGGGTCAGCAACTGCTTCCGGTTACACCCAGGACTACCCCTGCCCGACCCTGTGGGACCCCCACCCCTCTGATGCTGTCTGCAGCTCAGTCCCTGCCAGCCCCCAGGAGCGCCTCCAGGGCCCCGCCCACTCTCCCACCCCTGAAGCTGCACTCCCACCCACCTAGCTCCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067-'8-11,'8-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.154 C2=0.201
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.5=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCAGCGGTTCATCAC
R:
CCCTCGGCCTCATGGTAAAAG
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)