Special

MmuEX0013362 @ mm9

Exon Skipping

Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139832222-139832987:+
Coord C1 exon
chr5:139832222-139832406
Coord A exon
chr5:139832560-139832701
Coord C2 exon
chr5:139832800-139832987
Length
142 bp
Sequences
Splice sites
3' ss Seq
AGGACCCCTCTGCTTCACAGGGC
3' ss Score
6.21
5' ss Seq
CTGGTAACT
5' ss Score
5.45
Exon sequences
Seq C1 exon
GTCGCGTGCAGGAGGAACTGGACCGAGTGCTGGGTCCTGGGCAGCTGCCTCAACCAGAGCACCAGCGAGCACTGCCCTACACCAGTGCTGTGTTGCATGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACAGCTGCTGACATCCAGCTGGGTGGCTACCTGCTCCCCAAG
Seq A exon
GGCACTCCTGTGATTCCTTTGCTCACTTCAGTCCTCCTGGACAAGACGCAGTGGGAGACCCCAAGCCAGTTCAACCCAAACCACTTTCTGGACGCGAAGGGGCGCTTTATGAAGCGGGGGGCCTTCCTGCCATTCTCCGCTG
Seq C2 exon
GTCGCCGGGTCTGCGTTGGGAAGAGCCTGGCCAGGACAGAGCTCTTCCTGCTGTTCGCTGGCCTCCTTCAGCGGTACCGCCTCCTGCCCCCACCCGGCCTCAGCCCTGCAGACCTGGATTTACGGCCTGCCCCAGCTTTCACCATGCGGCCTCCTGCCCAGACCTTGTGTGTGGTGCCGAGATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.323 A=0.000 C2=0.016
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=FE(13.4=100)

							
A:
PF0006717=p450=FE(10.3=100)

							
C2:
PF0006717=p450=PD(12.5=90.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000031521





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:988277-988418 
HIGH PSI
HsaEX6006787
(CYP2W1)
Human
(hg19)
chr7:1027913-1028054 
HIGH PSI
HsaEX6006787
(CYP2W1)
Rat
(rn6)
chr12:17383437-17383578 
HIGH PSI
RnoEX6063666
(Cyp2w1)
Cow
(bosTau6)
chr25:42306656-42306797 
HIGH PSI
BtaEX6111345
(CYP2W1)
Chicken
(galGal4)
chr14:2258187-2258328 
HIGH PSI
GgaEX0026374
([1])
Chicken
(galGal3)
chr14:2264842-2264983 
HIGH PSI
GgaEX0026374
(E1C495_CHICK)
Zebrafish
(danRer10)
chr3:8386770-8386911 
HIGH PSI
DreEX0025442
(cyp2k31)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TACATCACACTCCTGCCCCAT

				
R: 
CACACACAAGGTCTGGGCAG

				
Band lengths: 
248-390

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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