DreEX0025442 @ danRer10
Exon Skipping
Gene
ENSDARG00000009874 | cyp2k31
Description
cytochrome P450, family 2, subfamily k, polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-091113-2]
Coordinates
chr3:8383390-8387176:-
Coord C1 exon
chr3:8386992-8387176
Coord A exon
chr3:8386770-8386911
Coord C2 exon
chr3:8383390-8383577
Length
142 bp
Sequences
Splice sites
3' ss Seq
AGATTTGATGTTTTGTGCAGGGC
3' ss Score
5.58
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
CCAAGGTTCAAGATGAGATTAAAAGAGTGATCGGTGATCGCCAGCCAGTGCCGGACGACAGGAAAAACTTACCATATACAGATGCTGTCATTCATGAAGTTCAGAGATTTGCTGATGTATTGCCCATTGGTTCCCCCCATCAAACCACCTGTGACGTTCATCTGAATGGATACCTCATCAAGAAG
Seq A exon
GGCACCAGCGTGTGCCCACTACTGGCGTCTGTGCTGAGGGATGAAAATGAGTGGGAAACACCTGACAGCTTTAACCCGAAACACTTCCTAAATAAACAGGGCCAGTTTGTGAAAAAGGATGCCTTCATGCCCTTCGGTGCAG
Seq C2 exon
GTCGCAGGCTTTGTATTGGAGAGAGTTTGGCCAGGATGGAGCTGTTTCTGTTCTTCACTTCTCTTCTTCAGCATTTCTGCTTTACTCCTCCTCCGGGAGTGTCTGAAGATGAGCTGGATCTCACACCAGTTGTGGGCTTTACACTGAACCCCATCCCGCATAAGCTGTGTGCAGTGAAACGCTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009874_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=PD(12.4=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTGCCCATTGGTTCCCCC
R:
AAGAGCGTTTCACTGCACACA
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]